PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g094030.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 200aa    MW: 22668.2 Da    PI: 8.7188
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g094030.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.32.1e-1614104196
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                     ffkv       + + l +p +f++     k+ +kt+t+++ sg sWe+ +  rk+sg    +vl +GWk+ +k+  Lk gDf+ F++dg + f  
  Csa11g094030.1  14 FFKVY--LPDESGDDLKIPISFTSFVP--KPFPKTVTVRSISGSSWELAF--RKCSGDvesFVLVNGWKRIAKDEYLKGGDFLEFEFDGFRHF-- 100
                     67777..44555667*******96665..56999****************..888887778*************************9876666.. PP

                     EEEE CS
              B3  93 vvkv 96 
                     ++ +
  Csa11g094030.1 101 NFCI 104
                     5554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.9E-177107IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.92E-187107IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.30812108IPR003340B3 DNA binding domain
CDDcd100174.59E-1412105No hitNo description
SMARTSM010191.6E-1314108IPR003340B3 DNA binding domain
PfamPF023622.5E-1414105IPR003340B3 DNA binding domain
SuperFamilySSF1019361.0E-8111184IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-5113196IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MNKGNSSDDC LPKFFKVYLP DESGDDLKIP ISFTSFVPKP FPKTVTVRSI SGSSWELAFR  60
KCSGDVESFV LVNGWKRIAK DEYLKGGDFL EFEFDGFRHF NFCIYERETM CKRLIPAQVI  120
KDYGLHFPES ITIVDPLAKK FGTLEKQIKI QTNGTVFVKG FGSIIRRNNV KTTDKVICEI  180
MKTGDSNLVQ TMKIHILSE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A4e-1341111104At1g16640
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0192312e-77AB019231.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MGO3.
GenBankCP0026882e-77CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankDQ0567302e-77DQ056730.1 Arabidopsis thaliana transcriptional factor B3 family protein (At5g60130) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002866371.11e-103hypothetical protein ARALYDRAFT_919255
SwissprotQ9LVG13e-54Y5013_ARATH; B3 domain-containing protein At5g60130
TrEMBLD7MT681e-102D7MT68_ARALL; Putative uncharacterized protein
STRINGscaffold_802655.11e-102(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49471843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60130.12e-45B3 family protein